rs31269490 SNP Detail

Summary

• ID
  rs31269490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79793085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTAAGAG AATATGTTTA
  AATATGAACT CACTACTTGA TATTTTTGTA ATATATATCT TACAAAAGTT AGGGTGTCTA
  TAAAAATCTT AAAAAGTATT TATTTCTTTT CTTATTTCTG AATCACAAAA AGGGGGTCTG
  CAGGGGATCC TGGTTGATGA CTTTTAAGAG TTTTGCTTCT CAGATGTAGT GGCTTTAACT
  R
  TGAGCTAGCA AACGCTCTTT GCAGCTTGTC TTCATTACTT TAAAGTAAAA TCAGACTCAC
  ACACCTATCT TGCTTCCGCA TTTTAAACTT TACACCAAAC TTGGTAGAAT TTGTGGAAGG
  AAAGGGTTAC TCGCCTCTTT CCTCTTGTAG AGGAACTGAA ATGGGTTGAG TTAGTGATTC
  AGTCAACTCT TGTTTCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035087	NES10768538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31269490					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035087	NES10768538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79793085 () rs orientation: forward

Symbol	Name	Function Class
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	519 bp distal
Rr578606	regulatory region 578606	56 bp proximal
Rr578607	regulatory region 578607	576 bp proximal
Rr578608	regulatory region 578608	1025 bp proximal
Rr578609	regulatory region 578609	1074 bp proximal
Rr578610	regulatory region 578610	1114 bp proximal
Tssr29596	transcription start site region 29596	1207 bp downstream
Tssr29597	transcription start site region 29597	1186 bp downstream
Tssr29598	transcription start site region 29598	688 bp downstream
Tssr29599	transcription start site region 29599	659 bp downstream
Tssr29600	transcription start site region 29600	610 bp downstream
Tssr29601	transcription start site region 29601	581 bp downstream
Tssr29602	transcription start site region 29602	171 bp upstream
Tssr29603	transcription start site region 29603	262 bp upstream
Tssr29604	transcription start site region 29604	334 bp upstream
Tssr29605	transcription start site region 29605	403 bp upstream
Tssr29606	transcription start site region 29606	436 bp upstream
Tssr29607	transcription start site region 29607	1106 bp upstream
Tssr29608	transcription start site region 29608	1124 bp upstream
Tssr33752	transcription start site region 33752	385 bp downstream
Tssr33753	transcription start site region 33753	403 bp downstream
Tssr33754	transcription start site region 33754	1018 bp downstream