rs31269488 SNP Detail

Summary

• ID
  rs31269488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTTTAAAT ATGAACTCAC TACTTGATAT TTTTGTAATA
  TATATCTTAC AAAAGTTAGG GTGTCTATAA AAATCTTAAA AAGTATTTAT TTCTTTTCTT
  W
  TTTCTGAATC ACAAAAAGGG GGTCTGCAGG GGATCCTGGT TGATGACTTT TAAGAGTTTT
  GCTTCTCAGA TGTAGTGGCT TTAACTGTGA GCTAGCAAAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47035085	NES10768537	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31269488					SNP	A	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035085	NES10768537	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	366 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	432 bp distal
Rr578606	regulatory region 578606	143 bp proximal
Rr578607	regulatory region 578607	663 bp proximal
Rr578608	regulatory region 578608	1112 bp proximal
Rr578609	regulatory region 578609	1161 bp proximal
Rr578610	regulatory region 578610	1201 bp proximal
Tssr29596	transcription start site region 29596	1120 bp downstream
Tssr29597	transcription start site region 29597	1099 bp downstream
Tssr29598	transcription start site region 29598	601 bp downstream
Tssr29599	transcription start site region 29599	572 bp downstream
Tssr29600	transcription start site region 29600	523 bp downstream
Tssr29601	transcription start site region 29601	494 bp downstream
Tssr29602	transcription start site region 29602	258 bp upstream
Tssr29603	transcription start site region 29603	349 bp upstream
Tssr29604	transcription start site region 29604	421 bp upstream
Tssr29605	transcription start site region 29605	490 bp upstream
Tssr29606	transcription start site region 29606	523 bp upstream
Tssr29607	transcription start site region 29607	1193 bp upstream
Tssr29608	transcription start site region 29608	1211 bp upstream
Tssr33752	transcription start site region 33752	472 bp downstream
Tssr33753	transcription start site region 33753	490 bp downstream
Tssr33754	transcription start site region 33754	1105 bp downstream