rs31269484 SNP Detail

Summary

• ID
  rs31269484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAACTCA CCCTTTTCAA GCTATATAAA CATCAAGGGG TAGTTAAATA
  ACAATTTTAG ATATGGAATA TATTGTGAAA ACAATGTGGA ACATTAGTTA AGAGAATATG
  TTTAAATATG AACTCACTAC TTGATATTTT TGTAATATAT ATCTTACAAA AGTTAGGGTG
  Y
  CTATAAAAAT CTTAAAAAGT ATTTATTTCT TTTCTTATTT CTGAATCACA AAAAGGGGGT
  CTGCAGGGGA TCCTGGTTGA TGACTTTTAA GAGTTTTGCT TCTCAGATGT AGTGGCTTTA
  ACTGTGAGCT AGCAAACGCT CTTTGCAGCT TGTCTTCATT ACTTTAAAGT AAAATCAGAC
  TCACACACCT ATCTTGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035081	NES10768533	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31269484					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035081	NES10768533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792961 () rs orientation: forward

Symbol	Name	Function Class
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	395 bp distal
Rr578606	regulatory region 578606	180 bp proximal
Rr578607	regulatory region 578607	700 bp proximal
Rr578608	regulatory region 578608	1149 bp proximal
Rr578609	regulatory region 578609	1198 bp proximal
Rr578610	regulatory region 578610	1238 bp proximal
Tssr29596	transcription start site region 29596	1083 bp downstream
Tssr29597	transcription start site region 29597	1062 bp downstream
Tssr29598	transcription start site region 29598	564 bp downstream
Tssr29599	transcription start site region 29599	535 bp downstream
Tssr29600	transcription start site region 29600	486 bp downstream
Tssr29601	transcription start site region 29601	457 bp downstream
Tssr29602	transcription start site region 29602	295 bp upstream
Tssr29603	transcription start site region 29603	386 bp upstream
Tssr29604	transcription start site region 29604	458 bp upstream
Tssr29605	transcription start site region 29605	527 bp upstream
Tssr29606	transcription start site region 29606	560 bp upstream
Tssr29607	transcription start site region 29607	1230 bp upstream
Tssr29608	transcription start site region 29608	1248 bp upstream
Tssr33752	transcription start site region 33752	509 bp downstream
Tssr33753	transcription start site region 33753	527 bp downstream
Tssr33754	transcription start site region 33754	1142 bp downstream