rs31269253 SNP Detail

Summary

• ID
  rs31269253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156575804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTATGT TTATAGAGTT
  TTCCACGGAC TGTGAGGACA CGATTGGGCA CTAAAGAAAC ACTGGCTAAA TAAATAGAGT
  GTGGGGTGGG GGGAGAGAAA TGAACACTTT GGGAGGCTCT TGAAAAGGGT CCAGGGCCTG
  ACATCAGCCT CAACGCTAGC CTTCACAAAG GAGAAACAAG ACCTTGGGGC TGAGCGGACT
  R
  TGTTAAACAT GTATCCTCCT TCCCCAAACA CCATCTGAGA AATTTTAAGA ACTCCCAAGG
  ACCAAGCAGA AGACATCAAC AGCTGCTAAG AAGATGGCGT GGAGAGAGAG GAAACTGAAG
  GGGTGGGCGC CAGCTTCCTC AGCAGACAGT AAAGACAAGC AGAGAAGAGG GGCAAGCGGT
  GGCCAGGAGG ACAGGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49720997	NES13071952	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31269253					SNP	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720997	NES13071952	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156575804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	258 bp proximal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	284 bp proximal
Rr421243	regulatory region 421243	923 bp proximal
Rr421244	regulatory region 421244	1672 bp proximal