rs31269246 SNP Detail

Summary

• ID
  rs31269246
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATGTATGA TGTCTCATAT ATATCATATA TATGTGCCTG
  TTTTTCAGGC ATACCCTCTC CCAGTTGGAC AGTAAAGGCA AGGTCCATGT GGATCATAAA
  W
  TCGTCTTATG GCACATATGT CCCCTCTCAT GGATGAAGTA ACTCTGATTG GGTCAAGAGA
  GCATGGGTAA GACATATGCA CTCCTTACTG GTTCTGTTCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49720989	NES13071901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31269246					SNP	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720989	NES13071901	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	893 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	610 bp distal
Rr421243	regulatory region 421243	within coordinates
Rr421244	regulatory region 421244	331 bp proximal