rs31268689 SNP Detail

Summary

• ID
  rs31268689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAACTGGA GTGATGTAAA AGATGAGTCT
  TGTTAGGCGT TTCCTGACTG TTCAAAGTGT TTGGTGGTGT ACTGTAAACA GGTTTCTCCA
  GGGAAACACT GAGCAGTCAT GCCCCCTTCT GTCCTCGGGA TTGGAAGTTT CTATGCTTAC
  Y
  GACCCTAGCT GATTGTATTG TGAACAGTTA CTTCTGTGAG ACTGAAATAG CCTCTGCATC
  ACCCCCACCG GATCCCTGAG GTTTTGGAGT GGCTCCACCC TTACTCAGGA CTCCGCCCCT
  GTGGGTTGAA CTTGCACTTT GTTCCTTCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49721415	NES13075184	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss320072522	CHEV_1_158545816	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31268689					SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721415	NES13075184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443255 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase			Intron
				mRNA-UTR
Rr396424	regulatory region 396424			941 bp downstream
Rr396425	regulatory region 396425			within coordinates
Rr421201	regulatory region 421201			1045 bp distal
Rr421202	regulatory region 421202			842 bp distal
Rr421203	regulatory region 421203			within coordinates
Rr421204	regulatory region 421204			24 bp distal
Rr421205	regulatory region 421205			1303 bp proximal
Tssr9572	transcription start site region 9572			133 bp upstream
Tssr9573	transcription start site region 9573			192 bp upstream
Tssr9574	transcription start site region 9574			218 bp upstream