rs31268687 SNP Detail

Summary

• ID
  rs31268687
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACCAGTTA CTGTAGAGAC CAGGACACCT
  TGCTTCCCTG CCTGGGCAGG GATGTCTCGG AGTTCGCTGT GGCCCACGTG ACAGGTGTGT
  TGAGATGAGG CTGGGGTGGG GGTAGACAAC ACAGTAATGA AATGTGGGTT ATCTGCTCCT
  K
  TAGTCTCCAC TGGGCTCAGT GAGGATTACA TGGCTTGTTT GTGTGCTTGT TTATCTTTTC
  AGTTTTATGG GGAGGggggc agggtctcaa aatgtaacct ccgttggtct ggaactcaga
  gatctgtctg cgtctgccag ccagcaccag                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss49721413	NES13075188	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G		G	G		T
ss320072527	CHEV_1_158546256	CHEVERUD	SCREENING_POP	f	SNP								T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31268687					SNP	T	G	G	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721413	NES13075188	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443695 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396424	regulatory region 396424	1381 bp downstream
Rr396425	regulatory region 396425	217 bp downstream
Rr421201	regulatory region 421201	1485 bp distal
Rr421202	regulatory region 421202	1282 bp distal
Rr421203	regulatory region 421203	within coordinates
Rr421204	regulatory region 421204	464 bp distal
Rr421205	regulatory region 421205	863 bp proximal
Tssr9572	transcription start site region 9572	263 bp downstream
Tssr9573	transcription start site region 9573	239 bp downstream
Tssr9574	transcription start site region 9574	192 bp downstream