rs31268686 SNP Detail

Summary

• ID
  rs31268686
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGAGACCA GGACACCTTG CTTCCCTGCC
  TGGGCAGGGA TGTCTCGGAG TTCGCTGTGG CCCACGTGAC AGGTGTGTTG AGATGAGGCT
  GGGGTGGGGG TAGACAACAC AGTAATGAAA TGTGGGTTAT CTGCTCCTGT AGTCTCCACT
  K
  GGCTCAGTGA GGATTACATG GCTTGTTTGT GTGCTTGTTT ATCTTTTCAG TTTTATGGGG
  AGGggggcag ggtctcaaaa tgtaacctcc gttggtctgg aactcagaga tctgtctgcg
  tctgccagcc agcaccagga gttaaggtgt                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss49721412	NES13075191	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G		G	G		T
ss320072528	CHEV_1_158546268	CHEVERUD	SCREENING_POP	f	SNP					T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31268686					SNP	T	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721412	NES13075191	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443707 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396424	regulatory region 396424	1393 bp downstream
Rr396425	regulatory region 396425	229 bp downstream
Rr421201	regulatory region 421201	1497 bp distal
Rr421202	regulatory region 421202	1294 bp distal
Rr421203	regulatory region 421203	within coordinates
Rr421204	regulatory region 421204	476 bp distal
Rr421205	regulatory region 421205	851 bp proximal
Tssr9572	transcription start site region 9572	275 bp downstream
Tssr9573	transcription start site region 9573	251 bp downstream
Tssr9574	transcription start site region 9574	204 bp downstream