rs31268685 SNP Detail

Summary

• ID
  rs31268685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156444197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGTGTG TACCAGCACA
  CCCAACATAC TAGACCTTTA ATAAATGTGT AATGAATGGA AGAACATGGA TAATATGTAA
  AATGATGTTA AATGGCACAT CTTGATTGAA AAACTTAAGC TAAATTGAAA ATTACCAAAT
  ATATTCCCAA CTAAAATAGT TTTTAGAAGA GTTATTAAAA ATTCCTAGCC TCTTAGAGCA
  Y
  ATACAAAGTA GAATAATGTT AAGTAATATA AAATAATGAA AACACTTTGA GGCAATGATT
  ACTGCCTGAC AATCTATAAT GAGAATGATT AAAAAAAAAG TAACAATTTA AATATTGAAA
  ATGTGCTTTA TAAGCTAAGC ATTAAATATC CAAATTTGAA TTTGTGTTTC AGTTTTATTA
  TTATAGGTTT TAAGTATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss49721411	NES13075082	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs31268685					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721411	NES13075082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156444197 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396424	regulatory region 396424	1883 bp downstream
Rr396425	regulatory region 396425	719 bp downstream
Rr421201	regulatory region 421201	1987 bp distal
Rr421202	regulatory region 421202	1784 bp distal
Rr421203	regulatory region 421203	214 bp distal
Rr421204	regulatory region 421204	966 bp distal
Rr421205	regulatory region 421205	361 bp proximal
Tssr9572	transcription start site region 9572	765 bp downstream
Tssr9573	transcription start site region 9573	741 bp downstream
Tssr9574	transcription start site region 9574	694 bp downstream