rs31268684 SNP Detail

Summary

• ID
  rs31268684
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156445190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TATTACATTT ATTAAATTTT
  K
  AAGAAGAGTT TTTTGTGTAT GTGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss45071273	mCV23342392	ABI	CRAMUS_MOUSE	f	SNP		G	T		G	T
ss49721410	NES13075083	PERLEGEN	MM_PANEL2	f	SNP	G			T			T	T	G
ss145800317	ENSMUSSNP2705989	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31268684					SNP	G	G	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721410	NES13075083	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156445190 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396425	regulatory region 396425	1712 bp downstream
Rr421203	regulatory region 421203	1207 bp distal
Rr421204	regulatory region 421204	1959 bp distal
Rr421205	regulatory region 421205	71 bp distal
Tssr9572	transcription start site region 9572	1758 bp downstream
Tssr9573	transcription start site region 9573	1734 bp downstream
Tssr9574	transcription start site region 9574	1687 bp downstream