rs31268652 SNP Detail

Summary

• ID
  rs31268652
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAACTCA CCCTTTTCAA
  GCTATATAAA CATCAAGGGG TAGTTAAATA ACAATTTTAG ATATGGAATA TATTGTGAAA
  ACAATGTGGA ACATTAGTTA AGAGAATATG TTTAAATATG AACTCACTAC TTGATATTTT
  K
  GTAATATATA TCTTACAAAA GTTAGGGTGT CTATAAAAAT CTTAAAAAGT ATTTATTTCT
  TTTCTTATTT CTGAATCACA AAAAGGGGGT CTGCAGGGGA TCCTGGTTGA TGACTTTTAA
  GAGTTTTGCT TCTCAGATGT AGTGGCTTTA ACTGTGAGCT AGCAAACGCT CTTTGCAGCT
  TGTCTTCATT ACTTTAAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035079	NES10768529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268652					SNP	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035079	NES10768529	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	433 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	365 bp distal
Rr578606	regulatory region 578606	210 bp proximal
Rr578607	regulatory region 578607	730 bp proximal
Rr578608	regulatory region 578608	1179 bp proximal
Rr578609	regulatory region 578609	1228 bp proximal
Rr578610	regulatory region 578610	1268 bp proximal
Tssr29596	transcription start site region 29596	1053 bp downstream
Tssr29597	transcription start site region 29597	1032 bp downstream
Tssr29598	transcription start site region 29598	534 bp downstream
Tssr29599	transcription start site region 29599	505 bp downstream
Tssr29600	transcription start site region 29600	456 bp downstream
Tssr29601	transcription start site region 29601	427 bp downstream
Tssr29602	transcription start site region 29602	325 bp upstream
Tssr29603	transcription start site region 29603	416 bp upstream
Tssr29604	transcription start site region 29604	488 bp upstream
Tssr29605	transcription start site region 29605	557 bp upstream
Tssr29606	transcription start site region 29606	590 bp upstream
Tssr29607	transcription start site region 29607	1260 bp upstream
Tssr29608	transcription start site region 29608	1278 bp upstream
Tssr33752	transcription start site region 33752	539 bp downstream
Tssr33753	transcription start site region 33753	557 bp downstream
Tssr33754	transcription start site region 33754	1172 bp downstream