rs31268650 SNP Detail

Summary

• ID
  rs31268650
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTGTGTG TGTGTGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AACTCACCCT TTTCAAGCTA TATAAACATC AAGGGGTAGT
  K
  AAATAACAAT TTTAGATATG GAATATATTG TGAAAACAAT GTGGAACATT AGTTAAGAGA
  ATATGTTTAA ATATGAACTC ACTACTTGAT ATTTTTGTAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035077	NES10768528	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268650					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035077	NES10768528	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	529 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1996 bp downstream
Rr375226	regulatory region 375226	within coordinates
Rr578604	regulatory region 578604	1970 bp distal
Rr578605	regulatory region 578605	269 bp distal
Rr578606	regulatory region 578606	306 bp proximal
Rr578607	regulatory region 578607	826 bp proximal
Rr578608	regulatory region 578608	1275 bp proximal
Rr578609	regulatory region 578609	1324 bp proximal
Rr578610	regulatory region 578610	1364 bp proximal
Tssr29596	transcription start site region 29596	957 bp downstream
Tssr29597	transcription start site region 29597	936 bp downstream
Tssr29598	transcription start site region 29598	438 bp downstream
Tssr29599	transcription start site region 29599	409 bp downstream
Tssr29600	transcription start site region 29600	360 bp downstream
Tssr29601	transcription start site region 29601	331 bp downstream
Tssr29602	transcription start site region 29602	421 bp upstream
Tssr29603	transcription start site region 29603	512 bp upstream
Tssr29604	transcription start site region 29604	584 bp upstream
Tssr29605	transcription start site region 29605	653 bp upstream
Tssr29606	transcription start site region 29606	686 bp upstream
Tssr29607	transcription start site region 29607	1356 bp upstream
Tssr29608	transcription start site region 29608	1374 bp upstream
Tssr33752	transcription start site region 33752	635 bp downstream
Tssr33753	transcription start site region 33753	653 bp downstream
Tssr33754	transcription start site region 33754	1268 bp downstream