rs31268647 SNP Detail

Summary

• ID
  rs31268647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTTGGA GAAATTCAAA
  ATTAAATTTT ATTTTTTATT TTTTTAGTCA TCTTTAAAAA GAACCTCACG TGTCTGAAAA
  CGGCGCAGCA GCCAGTTTAC AAATCATTTT GCTCCGCTGT TAGAAGGCGG CAGCTTTTAA
  GGCTGAGCCG AGATGTTTGA AAGGTGGAAC ACCCTTGGCC ATGAAATATG TTCTCCTTAC
  R
  TGCCTCAGCC TTTCAAAGTT CTGTGCATTA GAGTCAGGAA TTCCATTCTT CCTGGAGCTA
  AGCGTGGGGC CAGCTGTGTA AGTAAAGTTT TGTTTTTCTT CTTAAACAAC TTTTTCCCTC
  TATTTAAAAA TGTGAAGAAA AAGGCAAAAA AAACAACAAC AAAAAAAAAA ACAACAAAAA
  AAAACCCACC AAAAAACCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035073	NES10768621	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268647					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035073	NES10768621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			908 bp proximal
Gask1b	golgi associated kinase 1B			Intron
				mRNA-UTR
Gm36569	predicted gene, 36569			within coordinates
Rr375225	regulatory region 375225			1617 bp downstream
Rr375226	regulatory region 375226			326 bp upstream
Rr578602	regulatory region 578602			1668 bp distal
Rr578603	regulatory region 578603			1875 bp distal
Rr578604	regulatory region 578604			1591 bp distal
Rr578605	regulatory region 578605			within coordinates
Rr578606	regulatory region 578606			685 bp proximal
Rr578607	regulatory region 578607			1205 bp proximal
Rr578608	regulatory region 578608			1654 bp proximal
Rr578609	regulatory region 578609			1703 bp proximal
Rr578610	regulatory region 578610			1743 bp proximal
Tssr29596	transcription start site region 29596			578 bp downstream
Tssr29597	transcription start site region 29597			557 bp downstream
Tssr29598	transcription start site region 29598			59 bp downstream
Tssr29599	transcription start site region 29599			30 bp downstream
Tssr29600	transcription start site region 29600			3 bp upstream
Tssr29601	transcription start site region 29601			34 bp upstream
Tssr29602	transcription start site region 29602			800 bp upstream
Tssr29603	transcription start site region 29603			891 bp upstream
Tssr29604	transcription start site region 29604			963 bp upstream
Tssr29605	transcription start site region 29605			1032 bp upstream
Tssr29606	transcription start site region 29606			1065 bp upstream
Tssr29607	transcription start site region 29607			1735 bp upstream
Tssr29608	transcription start site region 29608			1753 bp upstream
Tssr33752	transcription start site region 33752			1014 bp downstream
Tssr33753	transcription start site region 33753			1032 bp downstream
Tssr33754	transcription start site region 33754			1647 bp downstream