rs31268645 SNP Detail

Summary

• ID
  rs31268645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTCGC TTAGCAAATG
  AGACACTAGG GGGCTCCCAG GGGCTGAAAG GAGCAGAAAG TTGTTTGAAT GAAAACTGGG
  TCTGAGCTGT GTTTGGAGAA ATTCAAAATT AAATTTTATT TTTTATTTTT TTAGTCATCT
  TTAAAAAGAA CCTCACGTGT CTGAAAACGG CGCAGCAGCC AGTTTACAAA TCATTTTGCT
  Y
  CGCTGTTAGA AGGCGGCAGC TTTTAAGGCT GAGCCGAGAT GTTTGAAAGG TGGAACACCC
  TTGGCCATGA AATATGTTCT CCTTACGTGC CTCAGCCTTT CAAAGTTCTG TGCATTAGAG
  TCAGGAATTC CATTCTTCCT GGAGCTAAGC GTGGGGCCAG CTGTGTAAGT AAAGTTTTGT
  TTTTCTTCTT AAACAACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035071	NES10768619	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268645					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035071	NES10768619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			995 bp proximal
Gask1b	golgi associated kinase 1B			Intron
				mRNA-UTR
Gm36569	predicted gene, 36569			within coordinates
Rr375225	regulatory region 375225			1530 bp downstream
Rr375226	regulatory region 375226			413 bp upstream
Rr578602	regulatory region 578602			1581 bp distal
Rr578603	regulatory region 578603			1788 bp distal
Rr578604	regulatory region 578604			1504 bp distal
Rr578605	regulatory region 578605			within coordinates
Rr578606	regulatory region 578606			772 bp proximal
Rr578607	regulatory region 578607			1292 bp proximal
Rr578608	regulatory region 578608			1741 bp proximal
Rr578609	regulatory region 578609			1790 bp proximal
Rr578610	regulatory region 578610			1830 bp proximal
Tssr29596	transcription start site region 29596			491 bp downstream
Tssr29597	transcription start site region 29597			470 bp downstream
Tssr29598	transcription start site region 29598			within coordinates
Tssr29599	transcription start site region 29599			44 bp upstream
Tssr29600	transcription start site region 29600			90 bp upstream
Tssr29601	transcription start site region 29601			121 bp upstream
Tssr29602	transcription start site region 29602			887 bp upstream
Tssr29603	transcription start site region 29603			978 bp upstream
Tssr29604	transcription start site region 29604			1050 bp upstream
Tssr29605	transcription start site region 29605			1119 bp upstream
Tssr29606	transcription start site region 29606			1152 bp upstream
Tssr29607	transcription start site region 29607			1822 bp upstream
Tssr29608	transcription start site region 29608			1840 bp upstream
Tssr33752	transcription start site region 33752			1101 bp downstream
Tssr33753	transcription start site region 33753			1119 bp downstream
Tssr33754	transcription start site region 33754			1734 bp downstream