rs31268201 SNP Detail

Summary

• ID
  rs31268201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52651415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT GTCTGTTCCT GCAATTTAGC
  W
  TTAAATACTT ATTGAAAGTA TCACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47534771	NES11465030	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A	A	T	A	T	T	A	T	T	T
ss144869215	ENSMUSSNP5405102	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268201					SNP	T	T	A	A	A	A	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47534771	NES11465030	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52651415 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	1324 bp upstream
Gm64848	predicted gene, 64848	within coordinates
Rr663484	regulatory region 663484	1163 bp distal
Tssr81291	transcription start site region 81291	1482 bp upstream
Tssr81292	transcription start site region 81292	1309 bp upstream
Tssr81293	transcription start site region 81293	1236 bp upstream
Tssr81294	transcription start site region 81294	1189 bp upstream