rs31267883 SNP Detail

Summary

• ID
  rs31267883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCACTTC AGCTTCCCAA
  GGCTGCCATT TCTGTGTCGC TTAGCAAATG AGACACTAGG GGGCTCCCAG GGGCTGAAAG
  GAGCAGAAAG TTGTTTGAAT GAAAACTGGG TCTGAGCTGT GTTTGGAGAA ATTCAAAATT
  AAATTTTATT TTTTATTTTT TTAGTCATCT TTAAAAAGAA CCTCACGTGT CTGAAAACGG
  Y
  GCAGCAGCCA GTTTACAAAT CATTTTGCTC CGCTGTTAGA AGGCGGCAGC TTTTAAGGCT
  GAGCCGAGAT GTTTGAAAGG TGGAACACCC TTGGCCATGA AATATGTTCT CCTTACGTGC
  CTCAGCCTTT CAAAGTTCTG TGCATTAGAG TCAGGAATTC CATTCTTCCT GGAGCTAAGC
  GTGGGGCCAG CTGTGTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035069	NES10768617	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31267883					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035069	NES10768617	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			1025 bp proximal
Gask1b	golgi associated kinase 1B			Intron
				mRNA-UTR
Gm36569	predicted gene, 36569			within coordinates
Rr375225	regulatory region 375225			1500 bp downstream
Rr375226	regulatory region 375226			443 bp upstream
Rr578602	regulatory region 578602			1551 bp distal
Rr578603	regulatory region 578603			1758 bp distal
Rr578604	regulatory region 578604			1474 bp distal
Rr578605	regulatory region 578605			within coordinates
Rr578606	regulatory region 578606			802 bp proximal
Rr578607	regulatory region 578607			1322 bp proximal
Rr578608	regulatory region 578608			1771 bp proximal
Rr578609	regulatory region 578609			1820 bp proximal
Rr578610	regulatory region 578610			1860 bp proximal
Tssr29596	transcription start site region 29596			461 bp downstream
Tssr29597	transcription start site region 29597			440 bp downstream
Tssr29598	transcription start site region 29598			within coordinates
Tssr29599	transcription start site region 29599			74 bp upstream
Tssr29600	transcription start site region 29600			120 bp upstream
Tssr29601	transcription start site region 29601			151 bp upstream
Tssr29602	transcription start site region 29602			917 bp upstream
Tssr29603	transcription start site region 29603			1008 bp upstream
Tssr29604	transcription start site region 29604			1080 bp upstream
Tssr29605	transcription start site region 29605			1149 bp upstream
Tssr29606	transcription start site region 29606			1182 bp upstream
Tssr29607	transcription start site region 29607			1852 bp upstream
Tssr29608	transcription start site region 29608			1870 bp upstream
Tssr33752	transcription start site region 33752			1131 bp downstream
Tssr33753	transcription start site region 33753			1149 bp downstream
Tssr33754	transcription start site region 33754			1764 bp downstream