rs31267879 SNP Detail

Summary

• ID
  rs31267879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTGGC CGTTTTACCC
  CCATCGAGAA CTGGTGGGAG ACAAGAGTTA GTCTGCAAAC AGCCCAGATG TAAGGTAAGT
  TGCAGGCCCT GGACTCTGGC GTCCAGTTTC CCCTTCCCAA CTCCGTGGGG TCAGGCAGGG
  GTCAGTGGGC ACTCCTCATT TTTCTAAGGT ATTTATTTGG CAACAGGGTC TCCGCCAACT
  S
  CAGCAAAACA CTTCAGATCA CTTCAGCTTC CCAAGGCTGC CATTTCTGTG TCGCTTAGCA
  AATGAGACAC TAGGGGGCTC CCAGGGGCTG AAAGGAGCAG AAAGTTGTTT GAATGAAAAC
  TGGGTCTGAG CTGTGTTTGG AGAAATTCAA AATTAAATTT TATTTTTTAT TTTTTTAGTC
  ATCTTTAAAA AGAACCTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035065	NES10768613	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31267879					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035065	NES10768613	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1240 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1285 bp downstream
Rr375226	regulatory region 375226	658 bp upstream
Rr578602	regulatory region 578602	1336 bp distal
Rr578603	regulatory region 578603	1543 bp distal
Rr578604	regulatory region 578604	1259 bp distal
Rr578605	regulatory region 578605	within coordinates
Rr578606	regulatory region 578606	1017 bp proximal
Rr578607	regulatory region 578607	1537 bp proximal
Rr578608	regulatory region 578608	1986 bp proximal
Tssr29596	transcription start site region 29596	246 bp downstream
Tssr29597	transcription start site region 29597	225 bp downstream
Tssr29598	transcription start site region 29598	207 bp upstream
Tssr29599	transcription start site region 29599	289 bp upstream
Tssr29600	transcription start site region 29600	335 bp upstream
Tssr29601	transcription start site region 29601	366 bp upstream
Tssr29602	transcription start site region 29602	1132 bp upstream
Tssr29603	transcription start site region 29603	1223 bp upstream
Tssr29604	transcription start site region 29604	1295 bp upstream
Tssr29605	transcription start site region 29605	1364 bp upstream
Tssr29606	transcription start site region 29606	1397 bp upstream
Tssr33752	transcription start site region 33752	1346 bp downstream
Tssr33753	transcription start site region 33753	1364 bp downstream
Tssr33754	transcription start site region 33754	1979 bp downstream