rs31267878 SNP Detail

Summary

• ID
  rs31267878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAA GGTATTTATT TGGCAACAGG
  R
  TCTCCGCCAA CTCCAGCAAA ACACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035063	NES10768608	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31267878					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035063	NES10768608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1253 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1272 bp downstream
Rr375226	regulatory region 375226	671 bp upstream
Rr578602	regulatory region 578602	1323 bp distal
Rr578603	regulatory region 578603	1530 bp distal
Rr578604	regulatory region 578604	1246 bp distal
Rr578605	regulatory region 578605	within coordinates
Rr578606	regulatory region 578606	1030 bp proximal
Rr578607	regulatory region 578607	1550 bp proximal
Rr578608	regulatory region 578608	1999 bp proximal
Tssr29596	transcription start site region 29596	233 bp downstream
Tssr29597	transcription start site region 29597	212 bp downstream
Tssr29598	transcription start site region 29598	220 bp upstream
Tssr29599	transcription start site region 29599	302 bp upstream
Tssr29600	transcription start site region 29600	348 bp upstream
Tssr29601	transcription start site region 29601	379 bp upstream
Tssr29602	transcription start site region 29602	1145 bp upstream
Tssr29603	transcription start site region 29603	1236 bp upstream
Tssr29604	transcription start site region 29604	1308 bp upstream
Tssr29605	transcription start site region 29605	1377 bp upstream
Tssr29606	transcription start site region 29606	1410 bp upstream
Tssr33752	transcription start site region 33752	1359 bp downstream
Tssr33753	transcription start site region 33753	1377 bp downstream
Tssr33754	transcription start site region 33754	1992 bp downstream