rs31266507 SNP Detail

Summary

• ID
  rs31266507
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79795898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCATTTT CTCTTATGAA
  CAAACTAGCA ATAGAACTCT TCTAGTTTGA CTGTGCCTAT TTTGTGCCAG AATTCCTCTT
  GGACATTTGA TTCTGTTCCC TGGGTTTCTA GAATATCAAA ACCCCTAAAA TTCAGTTTGA
  AGAAGTCTCT GGCATGGTCC TCGCTCCAGC CATATCCAAG TGGCGGTTGA AATAAATGAA
  K
  AGAGTCACAG CCGCGGCTCA GTGTGATGAG TTCAAGAGTA GGATTTTGTA TCAGATGGCT
  TCAGTGGTTG TTCTTGCTTC AATATCTCTT CCCTTCAGTG TTTTAGAGTC ATGAAGTCAG
  GTCAGCTTCC TCAGGAGCAT ATGTATGGAC TCACGTGTGC ATCATTTCAT ACAGGTGTTT
  TGTTACAGTG AGGTAGGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47035137	NES10768407	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31266507					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035137	NES10768407	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79795898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1900 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	1774 bp upstream
Rr375226	regulatory region 375226	1317 bp downstream
Rr578608	regulatory region 578608	1288 bp distal
Rr578609	regulatory region 578609	1718 bp distal
Rr578610	regulatory region 578610	1678 bp distal
Rr578611	regulatory region 578611	167 bp distal
Tssr29607	transcription start site region 29607	1696 bp downstream
Tssr29608	transcription start site region 29608	1636 bp downstream
Tssr33754	transcription start site region 33754	1769 bp upstream