rs31263613 SNP Detail

Summary

• ID
  rs31263613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156570371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TTGCTGGTGT CCCGGCTTAA
  R
  GCAGACCTTA GCTCTGGGCT TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45062198	mCV24597258	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss49721019	NES13072079	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	G	A	G	G	A	G
ss145803885	ENSMUSSNP6085660	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263613					SNP	G	G	A	A	A	G	A	G	G	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721019	NES13072079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156570371 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	1603 bp upstream
Gm69913	predicted gene, 69913	656 bp downstream
Rr421237	regulatory region 421237	156 bp distal
Rr421238	regulatory region 421238	1109 bp proximal
Rr421239	regulatory region 421239	1466 bp proximal
Rr421240	regulatory region 421240	1793 bp proximal