rs31263609 SNP Detail

Summary

• ID
  rs31263609
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156571870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG AGGCTGCTGC CAGACAGTGC
  M
  ACAAGATGAA ACCACAACCA GTTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45128622	mCV24597251	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		A
ss49721015	NES13072042	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		A	A	A	C	A	C	C	A	C
ss145803906	ENSMUSSNP264043	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263609					SNP	C	C	A	A	A	C	A	C	A	A	A	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721015	NES13072042	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156571870 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	104 bp upstream
Gm69913	predicted gene, 69913	within coordinates
Rr421237	regulatory region 421237	1655 bp distal
Rr421238	regulatory region 421238	34 bp distal
Rr421239	regulatory region 421239	within coordinates
Rr421240	regulatory region 421240	294 bp proximal
Rr421241	regulatory region 421241	924 bp proximal