rs31263581 SNP Detail

Summary

• ID
  rs31263581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC ATTCTGGGAA AGAATGAAGC
  R
  AGACGGGAAA GGGAGACTGC AGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45515894	mCV24891962	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss135467996	ENSMUSSNP165131	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320835330	CHEV_3_87553530	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31263581					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656915 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	983 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	776 bp distal
Rr579536	regulatory region 579536	159 bp distal
Rr579537	regulatory region 579537	385 bp distal
Tssr33946	transcription start site region 33946	1053 bp upstream
Tssr33947	transcription start site region 33947	1040 bp upstream
Tssr33948	transcription start site region 33948	1010 bp upstream
Tssr33949	transcription start site region 33949	993 bp upstream
Tssr33950	transcription start site region 33950	978 bp upstream