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rs31260586 SNP Detail
Summary
  • ID
    rs31260586
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:156735787 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTGTTTTTA GTTTAAACTA
    AATAACAAGC ATTTAAAACG TGGCAAAGTA ATACATCCCC CAGCTCAGTT TCCCAGTTTT
    AGATGCAACC TCTAGGTTAA CAATGCAGAC GAGACTTGCC TTTATTATTC CCCTACCAAG
    ACGCCACTAA CACTTAAAAA TACAGGACAT GTCGCAAAAG AACAATGCAA GCCATGTCCA
    Y
    TTGTGTGGAG GGACTAAGGT TTGTTGAATA CTCTCAACCC ATTATCCCAC TGAAAACACG
    AGCTAAGGGA AAATACTGTA CTCACGCTCT GACAAAAAAA AAAATGTCAC TGCTATTCCC
    CAGCACAGAG AACAGCCTCT GGGGCAGCAT CGGGCAGGTG AGGACAGAGA ATCGTGACTC
    AAGACATCTA AGACGCTAGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49720123 NES13067364 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31260586 SNP T T T T T T C T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49720123 NES13067364 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:156735787 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ralgps2 Ral GEF with PH domain and SH3 binding motif 2 Intron
Noncoding-Transcript-Variant
Rr421275 regulatory region 421275 1849 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory