rs31254350 SNP Detail

Summary

• ID
  rs31254350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:101878805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT TCTATCTTAG GTACTCTTTA
  Y
  GTGTGTGTAA GCACATGCAC TCACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46013791	mCV23434713	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		C
ss47096507	NES11626168	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	C	C	T		C	T	C	C		C
ss145564653	ENSMUSSNP5604426	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss322353417	CHEV_7_109378112	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31254350					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47096507	NES11626168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101878805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pgap2	post-GPI attachment to proteins 2			Intron
				Noncoding-Transcript-Variant
Tssr68312	transcription start site region 68312			371 bp upstream
Tssr68313	transcription start site region 68313			428 bp upstream
Tssr68314	transcription start site region 68314			531 bp upstream
Tssr68315	transcription start site region 68315			553 bp upstream
Tssr68316	transcription start site region 68316			1223 bp upstream
Tssr68317	transcription start site region 68317			1227 bp upstream
Tssr68318	transcription start site region 68318			1427 bp upstream
Tssr68319	transcription start site region 68319			1979 bp upstream