rs31252527 SNP Detail

Summary

• ID
  rs31252527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79572531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATCTC AGCAGTAGGG
  AGACTGGGAC AGGAGGATAC ATGCAAGTGA GTTTAAGGCC AGCCTGGGCT ACATAGTGAA
  ATCTTGTTTA AAAAATAGTC TCGATTCACA TTTTTCTTTT TGGGTGCTTA GGATTCAACC
  CAGGATCCTT TGCACTAAGT TAGCACTCAA CCATCAAGCT GCCTCTCCAG CCGCACAGTG
  Y
  CCACAATGTT AACTGTTGAT CGCTTCTGTA AAGCACTGCT CGATTGTGTT TAGTTATTAA
  GTCTCTCATT ATCTTCCTGA GTTTATTGCT CAGCATGTCT ACTTTGCTGT AAATTTGGAT
  ACAAAACAGT CAACTTTTGA AAATTTCTTA CAAAACAGGA GGTAAAGGAA GTTTTCTTGA
  TTCCGGTAGG CAGTTTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47032494	NES10769011	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31252527					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032494	NES10769011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79572531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr578564	regulatory region 578564			within coordinates
Rr578565	regulatory region 578565			252 bp distal
Rxfp1	relaxin/insulin-like family peptide receptor 1			Intron
				Noncoding-Transcript-Variant