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rs31251628 SNP Detail
Summary
  • ID
    rs31251628
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:79572185 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATATATCCGA AAGATTGGGA
    AGATCAAGAA TTAAGGGATC TCAACACTGA ATACATTGGA GAAGGTTATG TTTACTCTTG
    GAGAGCAACA TAAAAGGAGC GTATTTGAAG TCAGGCTGTA GAATGAACAG CAGACCGCTC
    TTCTGGAGGA AGAGTTCTTC ATTCTATGAA AGTGGCTGCT AAACGCTAAG AGAACTGTTT
    Y
    GTTAGTCGTC TTGGTTCAGG CTTTTGGTCT GGTCCTGCTC CTTTTATCTT ATTGCTAATG
    GTTATTCATG AACATACCAC CAGGTGGCAG TGTTCCATGG CAAATCAAAG TATGCTCTCT
    TAAAGTTGCC TGCCGCAGCT CCCACCTGTA ATCTCAGCAG TAGGGAGACT GGGACAGGAG
    GATACATGCA AGTGAGTTTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47032484 NES10769085 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31251628 SNP C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47032484 NES10769085 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:79572185 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr578564 regulatory region 578564 within coordinates
Rr578565 regulatory region 578565 73 bp proximal
Rxfp1 relaxin/insulin-like family peptide receptor 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory