rs31250935 SNP Detail

Summary

• ID
  rs31250935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99971473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGATGT GAGTCCAGAG
  CCAGCGGGCA GAAGGGTAGG GAGCTCTGAG CATCACCTGG AGACCCTCAG GCTCTACTGC
  ACCCTGACCC CCTTCCTGCT CCCAGTGGAG ACTGAAGGAG ACAGCAGTCA AAATTACAGA
  TGCTAGAATC CCAGACTTCC ATTCTAATCG TGCTGCTTGT ACAAGCTTGG CATCTTTACC
  Y
  GTAAGTTAAA TGTAGTACTT TCCCCCAAGA GCTGAGTAAC TGGACTGGTC CCCATCCTTT
  GGGGAACAGC TCCAACTGTC AACTGTTCCA GTTACTTCCC ATCCCATCTC TACCCTAGCC
  TCTGTGCACA AGGCCTGCTC AACTCCTAGT TCTTTAAGCA AACCGCATTC TTGTTCACCC
  CAGGGCCTTG CTACGTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48031219	NES11896117	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31250935					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031219	NES11896117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99971473 () rs orientation: forward

Symbol	Name	Function Class
Rr635552	regulatory region 635552	180 bp distal
Rr635553	regulatory region 635553	1448 bp proximal