rs31250883 SNP Detail

Summary

• ID
  rs31250883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79571989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTACTGG TTGCCAGATG
  GCATGAAGTT ACTCAGAAGC AACAGTGACT CGTGCAGGGT AAAAGTGTGG GAGAGCTACT
  AAAACCTCCA TGGAAAACTT GCAAAGCTCT AGAGAAAAGC CAGTGTCTTG TCAGCACCAA
  GGACACTGTT GGCCTTGCTT TGGGAACTAC ACTTTAGTCG ACATTGACAG AGTTAAATAT
  R
  TCCGAAAGAT TGGGAAGATC AAGAATTAAG GGATCTCAAC ACTGAATACA TTGGAGAAGG
  TTATGTTTAC TCTTGGAGAG CAACATAAAA GGAGCGTATT TGAAGTCAGG CTGTAGAATG
  AACAGCAGAC CGCTCTTCTG GAGGAAGAGT TCTTCATTCT ATGAAAGTGG CTGCTAAACG
  CTAAGAGAAC TGTTTCGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47032478	NES10769082	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31250883					SNP	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032478	NES10769082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79571989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr578564	regulatory region 578564			29 bp proximal
Rr578565	regulatory region 578565			269 bp proximal
Rxfp1	relaxin/insulin-like family peptide receptor 1			Intron
				Noncoding-Transcript-Variant