rs31250874 SNP Detail

Summary

• ID
  rs31250874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79571795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTGCTG GAGACCAAGT
  GCGCTTTGCC CATAGTAGAC GGATGCCCTA CTACTGAGCT ATATTCTCAG CTAGAATTGT
  TCTTACATTG CACCTCTCCT TTGACCCCAG CAGTAGGGGT ATGCTAGAAC TTTGCAGAGC
  ACATGGATAT CCTGCCCTCA ACACTGTCCT TAGGTCTAAG GGCATCACAT ACTTAGTTTA
  M
  TGGTTGCCAG ATGGCATGAA GTTACTCAGA AGCAACAGTG ACTCGTGCAG GGTAAAAGTG
  TGGGAGAGCT ACTAAAACCT CCATGGAAAA CTTGCAAAGC TCTAGAGAAA AGCCAGTGTC
  TTGTCAGCAC CAAGGACACT GTTGGCCTTG CTTTGGGAAC TACACTTTAG TCGACATTGA
  CAGAGTTAAA TATATCCGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47032468	NES10769068	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31250874					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032468	NES10769068	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79571795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr578564	regulatory region 578564			223 bp proximal
Rr578565	regulatory region 578565			463 bp proximal
Rxfp1	relaxin/insulin-like family peptide receptor 1			Intron
				Noncoding-Transcript-Variant