rs31250043 SNP Detail

Summary

• ID
  rs31250043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99971406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTCCGG GCAGCTCAGA
  CTAACTGCCC AGCTGGCTGG AAGAGGTCTC CACAGACACT TCTACAAGAT CAGATGTGAG
  TCCAGAGCCA GCGGGCAGAA GGGTAGGGAG CTCTGAGCAT CACCTGGAGA CCCTCAGGCT
  CTACTGCACC CTGACCCCCT TCCTGCTCCC AGTGGAGACT GAAGGAGACA GCAGTCAAAA
  Y
  TACAGATGCT AGAATCCCAG ACTTCCATTC TAATCGTGCT GCTTGTACAA GCTTGGCATC
  TTTACCTGTA AGTTAAATGT AGTACTTTCC CCCAAGAGCT GAGTAACTGG ACTGGTCCCC
  ATCCTTTGGG GAACAGCTCC AACTGTCAAC TGTTCCAGTT ACTTCCCATC CCATCTCTAC
  CCTAGCCTCT GTGCACAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48031217	NES11896115	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31250043					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031217	NES11896115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99971406 () rs orientation: forward

Symbol	Name	Function Class
Rr635552	regulatory region 635552	113 bp distal
Rr635553	regulatory region 635553	1515 bp proximal