rs31250039 SNP Detail

Summary

• ID
  rs31250039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99970259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTATGCC TGCAATATTT
  AAAAATCAAG AATGTTCTAG AATAGTGTGC TGTCCAGTGC AATTTCCGGC AATGGAAATA
  TTCTCTCTGC CCTGTCTTAC ATCGTGGCCA CTAGCCACAT ATGGCCACTG AGCATTTGAA
  GTGTGGCTGA TGCCGCCAAA GAGCCAGATT ATTCATTCAA TTAAAATCTA AACACTTTGT
  R
  TAGAGTAGCC AGAGCCCTAG AGAGTATGAT TTTAGAATGG TGATTTACAT TGTGTATGTG
  CTGTGTATAC ATACATATAT GTGCATACAT TCATGTGTTT GTATGTGTGA GTGTATGTGT
  TACATGTCTG TGTGTATATG TCTGTGTACG GGGTTTAATG TGTATATATG TGTGCATGTA
  TATGCACATG TGTGTGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48031213	NES11896137	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31250039					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031213	NES11896137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99970259 () rs orientation: forward

Symbol	Name	Function Class
Rr635551	regulatory region 635551	1551 bp distal
Rr635552	regulatory region 635552	769 bp proximal