rs31250035 SNP Detail

Summary

• ID
  rs31250035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99969867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATTCC TCCTCCCCCT
  CCCCCTTCCC CTCCCCCTTC TCCTCCTCCT CTCCCTCCTC CTCCCCTCCC CTTCCTCTTC
  CTCCCCTTCT CCTCCCCTCC CCCTCCTCCT CCTTCTCCCC CCTCCCCCTC CCCTTCCTCC
  TCCCTCTCTC CTTCCTTCTC CTCCCCCTCT CCCTCCTCCC CCTCCCCCTT TCCTTTTGCA
  Y
  GTGAAGTACT TACACTGACC CAGGGCCTCA AGACACTAGG CGAGCATCCG AGCATCTGTG
  CACTGAACTC CACCTCCCTC CTTATTCTTG ACTTATTAAA GATGAGCAGG ACTACTAACA
  ATGTTGACAC ACCCTCAGTG TTGAATATAT TTTATTTTTA TCCCATCCAA GGGGATAGTA
  CCATCTGTCT GTATGTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss48031209	NES11896173	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31250035					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031209	NES11896173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99969867 () rs orientation: forward

Symbol	Name	Function Class
Rr635551	regulatory region 635551	1159 bp distal
Rr635552	regulatory region 635552	1161 bp proximal