rs31249878 SNP Detail

Summary

• ID
  rs31249878
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148793807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TAACTAGAGG AAGGAGAATC
  W
  CCAATTCGTA TAAATCCAGT CTCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45514873	mCV23013566	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					A	A
ss61098056	NES16608464	PERLEGEN	MM_PANEL2	f	SNP	T			A	T	T	T		A	T	T		T	A	T	T		A
ss136066828	ENSMUSSNP7169413	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						A
ss321017255	CHEV_3_148751135	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31249878					SNP	T	T	T	A	T	T	T	A	A	T	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098056	NES16608464	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148793807 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587258	regulatory region 587258	1165 bp distal
Rr587259	regulatory region 587259	507 bp distal
Rr587260	regulatory region 587260	48 bp distal
Rr587261	regulatory region 587261	252 bp proximal
Rr587262	regulatory region 587262	551 bp proximal
Rr587263	regulatory region 587263	1640 bp proximal