rs31249251 SNP Detail

Summary

• ID
  rs31249251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79571290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAATTAGT TGCTCATCAC
  TGGGGAAGAC TAATTCTCCC TCTCTTAGAA GTCACTAGTT GCCTGTACTT CTCTAGGCGT
  GGGGCCCAGT GAAAGTTTCT CCTTTGGCCT CAGTGTGTTT ATTAGTGATA TCATTTAGTT
  TTGGCACTCT TTCTGCACCT TCCCCTTGTG ATATGTTCTT TTAGTGACAT GGGTGTGGAA
  R
  CTGTGTTGGG GCTGGGCACA CCATGATCAG TTGTTTTCTG CATTTTTACA GTTGTTTTTT
  TGTGTTAGTC TTTCTGAGAG AATATTTAGT TCCTGTTTCC CCATCTTAAG TAGTCCTAGA
  AAAGATTCCT AGCAGCCTGC CATTGCTGTG AGCCATCGTA TCTGTCCTTT CAGGCAAGCA
  TCCCTTGTTC TTCACTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47032454	NES10769106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31249251					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032454	NES10769106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79571290 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr578564	regulatory region 578564			728 bp proximal
Rr578565	regulatory region 578565			968 bp proximal
Rxfp1	relaxin/insulin-like family peptide receptor 1			Intron
				Noncoding-Transcript-Variant