rs31248625 SNP Detail

Summary

• ID
  rs31248625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGCCGCCT GCGTCGCCCG CCCGTCCGCT CGCTTCCTCT
  CGCCCGCCGG GCCTCCGCTT CCTGGCTGGC CTCTCCTGCC CTGAGCTCGG GTACCACAGC
  R
  GCTCTGGCGA AGACGACTGC GGGGCCAGCG GCGGCGGCGG CAACGGCGGC GGAATGTGCT
  GCCGGCTGAG AGGGGGAGGC AGCCTCGATC TGAGGGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45514183	mCV24615982	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss135265152	ENSMUSSNP1667688	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31248625					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034320 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13258	CpG island 13258			within coordinates
Kpna4	karyopherin subunit alpha 4			Coding-Synonymous
				mRNA-UTR
Rr397714	regulatory region 397714			23 bp upstream
Rr578129	regulatory region 578129			1012 bp distal
Rr578130	regulatory region 578130			931 bp distal
Rr578131	regulatory region 578131			783 bp distal
Rr578132	regulatory region 578132			95 bp proximal
Tssr902	transcription start site region 902			40 bp downstream
Tssr33536	transcription start site region 33536			1617 bp upstream
Tssr33537	transcription start site region 33537			102 bp upstream
Tssr33538	transcription start site region 33538			49 bp downstream
Tssr33539	transcription start site region 33539			80 bp downstream
Tssr33540	transcription start site region 33540			111 bp downstream