rs31248579 SNP Detail

Summary

• ID
  rs31248579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146890057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT TAAACACCAA TCACACACAC
  K
  ATTCTCACCT TCCTACGGGT TAAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45514660	mCV24071898	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss136048055	ENSMUSSNP3910465	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321011563	CHEV_3_146847266	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31248579					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146890057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	1647 bp distal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	1721 bp downstream
Rr587134	regulatory region 587134	1686 bp distal
Rr587135	regulatory region 587135	1254 bp distal
Rr587136	regulatory region 587136	50 bp distal