rs31248576 SNP Detail

Summary

• ID
  rs31248576
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135392273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACG TGGTCAGATG CATAGTTTCA
  M
  GCTCAATTTC CTGAAAGTGC TACAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45514656	mCV25339280	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss135928500	ENSMUSSNP5885434	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320972061	CHEV_3_135349476	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31248576					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135392273 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	within coordinates
Rr585766	regulatory region 585766	1459 bp proximal
Tssr35822	transcription start site region 35822	1373 bp downstream