rs31247790 SNP Detail

Summary

• ID
  rs31247790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157267436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCTTTA CTCATGGGAC
  AGCTGCCTTG CAAGGAGTTG CGGTCTAAAG AGTGTAGGGC AGGGAGAAAT GGAAAGAAAA
  TGAGAACTGA GTACCAGCCT GTTAATAAGA AACAAAGTAT TAGTCAATGT AGCAGCCTCC
  TGGAAATGAG AAAGGGACAA TGCTTCAATC TGTCCTCTCC CCTTAATGGA CGTGAACATC
  R
  TCATCCTCAT CGTTATTGTT GTTGTTTAGA TCAAAGGGAT GCTTGATTTT GAAAGGACAA
  GCACTCTAAA TATTCCCCCA AATAAATGTC CTCCGACAGA TGCTCCACCT GCTGAAGAGA
  ATATTTGCAG CTTAAGGTTG GACTAAGAAA GGGCGGGGGA GGCACCTTGT TCCCTCTGCA
  GAAGTGCCTC TATGGCCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49718217	NES13055649	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31247790					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49718217	NES13055649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157267436 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	758 bp upstream
Gm71050	predicted gene, 71050	within coordinates
Rr421381	regulatory region 421381	within coordinates
Rr421382	regulatory region 421382	685 bp proximal
Rr421383	regulatory region 421383	769 bp proximal
Tssr9590	transcription start site region 9590	754 bp upstream