rs31247789 SNP Detail

Summary

• ID
  rs31247789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157267714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC ACGTGAGACT GGAAAATTGA
  R
  CTGCTCTCTC TGCTTGCAGT GGCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45164495	mCV22694034	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss49718216	NES13055650	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G		G	A	G	A	G	G	G
ss145820888	ENSMUSSNP6420849	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31247789					SNP	G	G	G	A	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49718216	NES13055650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157267714 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	480 bp upstream
Gm71050	predicted gene, 71050	within coordinates
Rr421381	regulatory region 421381	within coordinates
Rr421382	regulatory region 421382	407 bp proximal
Rr421383	regulatory region 421383	491 bp proximal
Tssr9590	transcription start site region 9590	476 bp upstream