rs31247788 SNP Detail

Summary

• ID
  rs31247788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157268304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT CAGTTTTCAA ATCTGGAACC
  Y
  GGGATCTTTA GTGGAAGGCT CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45099462	mCV22694016	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss49718215	NES13055651	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	T		T	C	T	T	C	T	T	T
ss145820899	ENSMUSSNP1654655	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31247788					SNP	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49718215	NES13055651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157268304 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	173 bp upstream
Rr421381	regulatory region 421381	184 bp distal
Rr421382	regulatory region 421382	100 bp distal
Rr421383	regulatory region 421383	within coordinates
Tssr9590	transcription start site region 9590	78 bp downstream