rs31247787 SNP Detail

Summary

• ID
  rs31247787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157269782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTTCTTT CCTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CAAGTTTTTC TCCAGGAACC GCAAGCTAAC
  R
  CTCTCTCTCC CACCACATCT CTGTCCAATC GCATCATAAC TCTCCCAGGT GGCCTTACTT
  TAATCTACTC CCCAACTCCA GGCCCTTATC ACTGCATAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49718214	NES13055621	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31247787					SNP	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49718214	NES13055621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157269782 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	1651 bp upstream
Rr421381	regulatory region 421381	1662 bp distal
Rr421382	regulatory region 421382	1578 bp distal
Rr421383	regulatory region 421383	1242 bp distal
Rr421384	regulatory region 421384	735 bp proximal
Tssr9590	transcription start site region 9590	1556 bp downstream