rs31246003 SNP Detail

Summary

• ID
  rs31246003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151476184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAGAGT TTAAAACCAA
  TAAAAAATAA TGAGCTAAAT ATTTAAACAT AAGAAAATTA TTTTACTTAT AATGTTATAT
  CAGACACTAA AAAGATTGTT TACTAACAAG ATATATAAAG AAGGGTAAGG ACAAGGACAA
  TTTATGAGTA AGATATGGAT GGTGCTTCCT TAAGTGTATC CTTTTTTTTT GATAGTTCTG
  Y
  TATTATATAT TTCGGTTTTG AAACTATGAA TAAAAAGATA ATAAAAATCA ACCCAGGATA
  AAGAAGGATC CAAAAATAGA ATATAGAATA TTGTAATGGA GAGAGCAGCA CAATTAGAAG
  GTGTGGCCCT GTTGAAGTAG GTGTGTCACT GTGGGTGTGG GCTATAAGAC TCTCACCCTA
  ACTGCCTGGA AGTGAATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45514263	mCV24030326	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136098005	ENSMUSSNP4629248	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321026837	CHEV_3_151433511	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31246003					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151476184 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	491 bp proximal
Rr587416	regulatory region 587416	638 bp proximal
Rr587417	regulatory region 587417	749 bp proximal