rs31245613 SNP Detail

Summary

• ID
  rs31245613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50592586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT AATTTCCCTT CAGCCTCCTG
  Y
  TCCTAAGTCC CATCTCCTCC TAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45513966	mCV24455324	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135164013	ENSMUSSNP4225398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320758951	CHEV_3_50442059	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31245613					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50592586 () rs orientation: forward

Symbol	Name	Function Class
Rr576165	regulatory region 576165	1767 bp proximal
Tssr33183	transcription start site region 33183	709 bp upstream