rs31245449 SNP Detail

Summary

• ID
  rs31245449
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99936307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTAGGA TAATCGAGCT
  CATTTATTTT CAAGATAGCA AATGAAAAAT AAACTTTTAG CTTAAAAAAA ATGAAAACAA
  ACAAAACAAA ACAAAACAAC CCACAAGAAA AGAACAAATC AAAGATGGAA GACAGGACCT
  CCTTGCTCCT CAGGCTGGAG TCATTTGGGC TCCCTGGTGC ATTTCCACAG GCATGGCCCA
  W
  GTCTACTCCT CAACCTGGGG CACAGGCCCT GAGTGTCCAA TCCTGGCAGT TCTACTGAAC
  ATCCTTGGGC TCTTCTCACC TCGTTCTCAA GCCTCCACCA AGGCTAAGCC AGCTCACCAG
  AGAAGAAAGG AACATTTCCT GGTTGCACAT TCCAACAGCA TTATTGCAAC CTGAGCCCTT
  TGTATTTTTT GACATCCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48031099	NES11898253	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31245449					SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031099	NES11898253	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99936307 () rs orientation: forward

Symbol	Name	Function Class
Rr635541	regulatory region 635541	283 bp proximal