rs31243725 SNP Detail

Summary

• ID
  rs31243725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99972726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGGGG AATGCAAGAG
  AGATGGAGAA AGAAGAGCTA TACACACACA CACACACACA CACACACACA CACACAAACC
  AAAACAGAGA GAGGAGAGGG GAGGATAGAG AAAGAGTGGT AAAATTCTTT TTCTCATGAA
  GTTGGCATCC TGAAGTTGAT TGGCCACTGA CAGGGAACAG AGATATACAG AGAGGGAAAC
  Y
  CAAGGACTGG TCCTGAAGCC ACCAGTGATG CCTGTGAAAA AGACATTGGG ACTCATGTAT
  ATTGCTTAAT TTTGGTTATT ACTGGGTTAG GTCTGGAACC AACTAAGAGA CAAGCTCTGA
  GTGGGTCAAC AAGGGCGGTC CATGAAGGAT TAACTGAGAT GAACACCCTC CCCAGAATGG
  TCAACACCTT TTGACAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48031225	NES11896052	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31243725					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031225	NES11896052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99972726 () rs orientation: forward

Symbol	Name	Function Class
Rr635552	regulatory region 635552	1433 bp distal
Rr635553	regulatory region 635553	195 bp proximal