rs31243169 SNP Detail

Summary

• ID
  rs31243169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99934618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCATGC AGAGGAAACC
  AGTGGGCAGA GTTCCTTCAT GGTCTCCTCT GCCTCCTGGC TCTTGCCTTG AGTTTCTACC
  CTGACTTTCC ATCAATGTTG GACTACAAAC TTCTAAAATG AGCTAAACCC TTTCCTTCCC
  ATCTTGCTTT GGGCCACTGT GTTTAGCAGC ATAGCAGTTA AAAGCAAACT AGAACAGTTG
  Y
  TCTGGTTTGT GGTATGTTTT TGTGGGCTGA GCTTTAGAAC GGCTCATCCT GCGCAGACGT
  TGCAGGTTCC AGCCAGAGCT CAGGGAAAAT GCTAGTTCCC TGAGCCTCTC AGCTCACAAC
  CCTGGGGACT ACAAGATCAG CTGGGAAGTG AGCCTCACCA CAAACACAGC ACATCTTGCT
  GAGACAGAGT GTGTGCGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48031069	NES11898405	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31243169					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48031069	NES11898405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99934618 () rs orientation: forward

Symbol	Name	Function Class
Rr635541	regulatory region 635541	1972 bp proximal