rs31243149 SNP Detail

Summary

• ID
  rs31243149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87342010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTAGTCT ACAGCATGAA CTCCAAGTCA TCCAGAGATA
  TATAGTAATA ATACCTTCTC TTTTAAAAAT TAATAAACCA TATAATATGA AAAGTTAGAA
  Y
  CTCATAATTC ATTGAAATGA ATAAAAAAAT GTGCAAGGTG AGCACATTTC TGCTGGGGGT
  GGGGGCAATG AGCTCCCCTA TGCTGCCTGG TGGGTTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45513364	mCV24898898	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135461467	ENSMUSSNP3903950	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320833440	CHEV_3_87238625	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31243149					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87342010 () rs orientation: forward

Symbol	Name	Function Class
Fcrl5	Fc receptor-like 5	1074 bp upstream
Rr397756	regulatory region 397756	897 bp upstream
Rr579488	regulatory region 579488	757 bp proximal
Tssr29807	transcription start site region 29807	1061 bp upstream
Tssr29808	transcription start site region 29808	1095 bp upstream
Tssr29809	transcription start site region 29809	1117 bp upstream