rs31242535 SNP Detail

Summary

• ID
  rs31242535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147335005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGTCCT ATTGGCATTT
  ATCCTATTGC CATTTGTCCT GTGTCCTCTG CCTTACAGAG GCTTTACAGT TTCATGAGGC
  CCCATCTATT AATTGTTGAT CTCAGTGTCT GTGCTATTGG TGTTCTGTTC AGGAAATTGT
  CTCCTTTGTC AACACATTTA AAGCTATTTC CCAGTTTCTC TTCTACTAGG CTCAATGAAA
  Y
  TGGCTTTCTT TTGAGGTATT TCATCCAGTT GGACTTGAGT TTTGTGTAGG GTGATAGGTA
  TGGATCTATT TACATTCTTC TACATGCATA CATCCAGTTA AACCAGCATG ATTTGTTGAA
  GACACCTTCT TTTTTCCATT GTATAATTTT GGCTTCTTTA TAAAAAATCA GGTGTCCATA
  GGTGGGTAAA TTTATGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031515	NES10849758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31242535					SNP	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031515	NES10849758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147335005 () rs orientation: forward

Symbol	Name	Function Class
Gm36888	predicted gene, 36888	within coordinates
Rr587154	regulatory region 587154	1036 bp distal