rs31242534 SNP Detail

Summary

• ID
  rs31242534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147334292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTCTGT TTTTGCCTGA
  AAATTTCATG TCATTGATTT TAATAGGTGA GTATTAATCC ATCCTGTAAA TGAACCACAT
  TTTCACTATC CATTCTTCCT TTGAGAGACA TCAGGGTTGT TTCCAGTTTC TGGCCACAAC
  AAATAAAACT CCTATGAACA GAGTTGATTA AGTTTCTCTG TGGTCGGATG AGTGTCCTTT
  R
  GATATATACC CAAAAGTGGT ATAGCTGGGC CATGAGGTAG ATGAATTTCC AATTTTCTGA
  GAAACTGTCA TTGATTTCCA AATTGGCTGT ACAAGTTTAA ACTCCCACAG TAATAGAGGA
  GTGTTCCCAT TGCTCCACAC TCTCACCAGC ATGAATTGCC ACTCCTGTTT TTGATTTTGA
  CAGATATAAG ATGGAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47031513	NES10849756	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31242534					SNP	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031513	NES10849756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147334292 () rs orientation: forward

Symbol	Name	Function Class
Gm36888	predicted gene, 36888	within coordinates
Rr587154	regulatory region 587154	323 bp distal