rs31241722 SNP Detail

Summary

• ID
  rs31241722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147333896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTCCAAA ATCAGTCAAA
  AGTGTCAGAG AGAGCACCCA TCCCCACGGT GATGAGTCCC ATGTGAAGTT CAAGGTACAC
  AACCATAGCA GATATGCAGA GGACCTAGGT CAGACCTATG CAGGCTCCCT GAATGGCGGT
  TCAGTCTCTG TGAACCCCTC TGAGCCCAGG TTAGTTGATT TGTGGGTTCT CTTTGGTGTT
  Y
  CTGAATTCTC TAGTTCCTAC AATCATTGCT CCCCTCTTCC TTGGGATTTG CCAAGCTCCA
  CCTAGTGTTT GGCTGTGGAT CTCTGCACTG TTTATGTTCC TCTCTAGACG AACTCTTTCT
  GAGGATGATT ATTCTAGGAC CCTTCAAGTC TGTCCTTTTA AGTGCAATTC ACCTCACTCA
  GCATGTTTTT TTTTTCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031511	NES10849754	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31241722					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031511	NES10849754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147333896 () rs orientation: forward

Symbol	Name	Function Class
Gm36888	predicted gene, 36888	within coordinates
Rr587154	regulatory region 587154	52 bp proximal